• Retrieve GFF3 file from Ensembl

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  • Difference between the Fasta files from UCSC and Gencode/Ensembl

    I would like to know if there is any difference between the genome build fasta files from UCSC an...

  • Why Do Genes Have Different Orientation?

    In the annotation file of UCSC, we can see some genes on the + strand and others on the - strand...

  • Why a gene name have more than one ensembl ID in gtf?

    As described. In ensembl gtf file, I find there are different gene_ids having same gene_name.For ...

  • NCBI vs ENSEMBL FASTA

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  • Tair Seems To Show Incorrect Annotation For A Spliced Gene

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    I can't seem to understand how come for a single gene ATMG00060.1, TAIR seems to show differ...

  • Ensembl: Genes versus Transcripts

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  • RNA and DNA variant difference

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  • Can I merge fastq files of a same sample from two sequencers for gene expression analysis?

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  • Ensembl and Aceview - difference in the UTR sequence

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  • GTF file in Ensembl database for RNA-Seq analysis

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    I am interested in the ex...

  • Gene symbol to mRNA sequence (refseq.rna)

    I have designed code using modules from mygene.info for gene annotaion query (converting gene sym...

  • List of Ensembl Transcript IDs corresponding to protein-coding genes

    Hello,

    Does anyone know where I can find a list of Ensembl transcript IDs (e.g., ENST0000011111)...

  • Which Ensembl chromosome sequence file is used for the gff3 files?

    **I can't which of the following files were used to create the GFF3 files?**

    ftp.ensembl...

  • Can detection of SNP from DNA (Intronic part) and mRNA (Exonic Part) make some real differences?

    In my understanding information regarding the gene expression come from mRNA (exon) and control o...



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