I'm new to plink, I read the plink online instruction that plink will uncompress gz file automati...
Hi everyone,
I've been trying to split huge BAM files (80Gb) by chromosomal location. For that I...
I'm trying to run cuffdiff with mouse_ucsc_mm9 genome reference, but encountered the following er...
Why does following command:
gene1=$(cat FOS_3TF_day2/anngene_FOS_3TF_day2 | tail -n+2 | cut ...
Hi!
I want to annotate my vcf file with GERP scores. I found that ensembl have variant effect pr...
Dear community,
I was wondering if any of you could give me some advice with the following issue...
Hi,
I'm having trouble using the ReportingTools package with the yeast genome.
I did a RNA-Seq ...
hello guys after giving the following command i am facing error for the output file being generat...
I am trying to annotate a VCF file by adding DBSNP information to the INFO column, using the give...
I want to do a cluster analysis using the distance functions in Biopython. But, the following lin...
I've tried to run SPAdes with following command:
$ spades/bin/spades.py -s input.fastq --ion...
HI,
Follow this link to see the image . In that red annotation track refers to reference annota...
Hello all.
I used the Sample file PeakAnalyzer (PeakAnnotator.peaks file)
(www.ebi.ac.uk/s...
Hi all,
I have problem when running bedtools closest and dont know why?!
I am running the follo...
Hey guys. I am trying to install bowtie1 on my mac but having some difficulties. I am using brew ...
Hi all,
I am trying to combine the p-values using the Brown's method available at "https://biocon...
I am running deseq2 on a matric of species abundance persample from a metagenomic dataset and am ...
I have one sequence with size of 2.4G. And I built index with bwa using the following command:
bw...
Hello
I'm trying to build a expression matrix to use as input in a different heatmap tool used o...
Hi,
I would like to identify all of the intersecting SNPs in .vcf files generated from snippy (h...
Hi,
I'm trying to run cuffdiff on 6 samples, divided into two groups of 3 samples each - G1(Fema...
Hi,
I'm getting an error while executing the following step in BFAST.
bfast fasta2brg -f ~/...
Hello,
I'm using VCFtools to compare 2 different vcf files. When I run vcf-compare with the foll...
Dear all,
I use Subread in Bash for mapping and FeatureCounts for count quantification for my RNA...