Which data recommends remaining or removing for backups of NGS (WES or WGS)?

1

Due to limited repository, I have to remove data after sequencing analysis. I think FASTQ and some BAMs have to remain. But I don't know which one to leave for storing, especially BAMs.

These are what I have in targeted WES. Is it right way to removing all files except that .bam, .recal.sorted.bam, *.recal.sorted.bam.bed.pileup ? If there is a recommended way, please advise me.

DATA.bam
DATA.fastqs.reads.count
DATA.fastqs.reads.length
DATA.forIndelRealigner.intervals
DATA.make_bam.log.txt
DATA.mapping_summary.txt
DATA.reads.count
DATA.realignment.bai
DATA.realignment.bam
DATA.realignment.table
DATA.recal.bai
DATA.recal.bam
DATA.recal.sorted.bam
DATA.recal.sorted.bam.bai
DATA.recal.sorted.bam.bed.pileup
DATA.recal.sorted.bam.bed.pileup.baf
DATA.recal.sorted.bam.cov.sample_cumulative_coverage_counts
DATA.recal.sorted.bam.cov.sample_cumulative_coverage_proportions
DATA.recal.sorted.bam.cov.sample_interval_statistics
DATA.recal.sorted.bam.cov.sample_interval_summary
DATA.recal.sorted.bam.cov.sample_statistics
DATA.recal.sorted.bam.cov.sample_summary
DATA.recal.sorted.bam.insertsize.histogram.pdf
DATA.recal.sorted.bam.insertsize.txt
DATA.recal.sorted.bam.metrics.txt
DATA.recal.sorted.bam.PER_TARGET_COVERAGE.metrics.txt
DATA.recal.sorted.bam.PER_TARGET_GENE_COVERAGE.txt
DATA.recal.sorted.bam.stat.txt
DATA.sorted.bam
DATA.sorted.bam.bai
DATA.sorted.bam.insertsize.histogram.pdf
DATA.sorted.bam.insertsize.txt
DATA.sorted.bam.metrics
DATA.sorted.bam.metrics.txt
DATA.sorted.bam.PER_TARGET_COVERAGE.metrics.txt
DATA.sorted.bam.stat.txt
DATA.sorted.dedup.bam
DATA.sorted.dedup.bam.bai
DATA.sorted.dedup.bam.insertsize.histogram.pdf
DATA.sorted.dedup.bam.insertsize.txt
DATA.sorted.dedup.bam.metrics.txt
DATA.sorted.dedup.bam.PER_TARGET_COVERAGE.metrics.txt
DATA.sorted.dedup.bam.stat.txt
DATA.sorted.unfiltered.bam
DATA.sorted.unfiltered.bam.bai
DATA.sorted.unfiltered.bam.stat.txt
DATA.target.sorted.bam
DATA.target.sorted.bam.bai
DATA.target.sorted.bam.stat.txt


BAM


BACKUP


FASTQ


WES


REMOVE

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