gravatar for Nicolas Rosewick

2 hours ago by

Belgium, Brussels

Hi,

I'm working on some ChIP-Seq data from ENCODE project. I've a set of SNP of interest that may disrupt a TF binding site. In order to check the impact of these SNPs on the TF binding affinity I would like to stratify the samples by GT.

I looked in ENCODE and there is some dataset of genotyping (most of theme array-based and some NGS-based) : www.encodeproject.org/matrix/?type=Experiment&status=released&assay_title=genotyping+HTS&assay_title=genotyping+array

However for the genotyping array, information is only for Copy Number variation, and not at a SNP level.

I'm wondering if there is some other ressources listing genotype information at the SNP level for ENCODE samples ?

Thank you



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