Question: what should the STR in the bwa mem -R option contain?

gravatar for wrab425

3 hours ago by

United Kingdom

I am aligning fastq files R1_1.fastq and R1_2.fastq to a small genome and using '@RGtID:R1tSM:R1' as the string in the -R option but I think this is causing the command to give a wrong answer. Perhaps you can suggest a reason.

Thanks



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