gravatar for Lila M

2 hours ago by

UK

Hi there,
I was wondering which could be the best approach to correlate expression levels (from RNA -seq) mutated genes and clinical variables for a specific patients data set.
I have two data frames, let's call them exp with the typical RNA-seq data processed by DESeq2 and other table with genes (1: mutated, 0 no mutated) and clinical variable of interest, let's call it mutated, that looks like this:

ID             gene1   gene2   gene3   gene4  var
patient1       0         1        0     0     low
patient2       0         0        0     1     high
patient3       1         1        0     0     low

any ideas?
Thank you!

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2 hours ago
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Lila M 890



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