• Problem with commands to run script

    Hi!
    I have to files generated from ORF finding tool and Genemark and a script that is supposed to...

  • identification of cryptic introns splice events

    Hi,

    We are working on alternative splice events of [cryptic splice sites][1]. I was wondering if...

  • Training GeneMark-EP+ ab-initio tool

    You could decide to use the evidence.gff and prothint.gff files from [ProtHint][1].
    In my case...

  • Mutation effect on splicing

    Hello
    Can you please introduce me database which can predict possible effect of a mutation in Int...

  • Genome Annotation Strategies

    I would like to discuss the type of strategies you use for whole genome annotation. I am not rest...

  • gene prediction without GT-AG splice site bias

    What would be the best approach to predict introns or gene model from RNA-seq/est and genome seq ...

  • Alternative splicing using rMATS

    I would like to study alternative splicing profile of several patients.I need a tool that takes ...

  • Alignment-free tools (like Kallisto or Salmon): useful for bacterial transcriptomes?

    I have a question about the use of alignment-free tools like Kallisto or Salmon for bacterial RNA...

  • interpretation of intronic variant detected by WES

    Hi

    I detected a variant in the intron of a gene that is predicted by MutationFinder to affect s...

  • Summary of alternative splicing from Cufflinks

    tl;dr How can I get summary information about alternative splicing from a Cufflinks analysis?

    A...

  • Strategies to shortlist True LoF mutations

    I was curious as to what strategies are applied by everyone to shortlist true LoF(Loss of functio...

  • Tool to determine percentage of transcripts that have the intron cleaved from RNA-seq data

    I'm interested in analyzing the splicing of a transcript that has two exons.

    Is there a tool tha...

  • Data Visualisation -- Exon/Intron Map?

    My friends, any ideas about how to get the similar plot to show the alternative RNA splicing? I...

  • Plasmodium berghei Alternative splicing sites ,how to predict if alternative splicing is happening or not ?any tool

    Im trying to clone my gene of interest and an I did my cloning efficiency is not that great but I...



  • Source link