Any suggestion on how to visualize the connection between two reads/fragments of paired end RNA-seq data.
The screenshot of the description is posted here
One paired ends are map to the genome by using BLAT (shown on top as black bar).
Aligned reads from STAR are shown in blue and red. There is blue and red fragment that corresponds to the above black fragment.
I want to show a connecting line between these two black bars or between it's corresponding blue/red.