Hi, I have a text file with SNP data that I'd like to convert to an input file for Structure. Cur...
Hello,
I am using STRUCTURE 2.3.4 software for population genetic analysis. But something goes w...
In our current data set, we have phenotype data on nearly one million individuals; we store this ...
We have performed a targeted sequencing of a few megabases of human DNA on ~20 samples using Illu...
I have a data.frame where I need to collapse rows by sample names in the indiv.ID column. Here is...
Hey guys,
I have a a 13 columns 58 row table, where each row is a species and each column represe...
I am a bit confused on the kind of data transformation I have to use for analyzing gene expressio...
Hi all,
I'm working with video data for drug phenotypes on some mutant cell lines. Output is th...
Hello,
I have ~250 patient INDEL and SNV vcfs from ICGC on one side. On the other side, I have a...
hi,
I have some data in the format
113934 126070
Individual1 0 0
Individual1 0 0
...
I am testing several RADseq SNP datasets for Fst outliers using BayeScan 2.1. These datasets repr...
I am trying to find the genes responsible for trait variation in a yeast population. The populati...
G'day all,
I am trying to convert a vcf file to a genepop file using PGDSpider command line. I w...
I have data on genetic variants for multiple individuals for a family in the form of a .vcf file....
Bioinformaticians often have to manage large text files containing reads, sequences of genomes, a...
I am currently learning Python. I would really like you help to solve the following problem using...
I have genetic data in .structure and .vcf format (and can easily reach other formats with [PGDSp...
I have a GenomeStudio genotype file with missing genotypes denoted by "-"
Using this file I gene...
I have a data frame with several rows as gene names and 3 columns with gen-expression value for e...
Hi,
I am trying to do an analysis that requires sequence data, and not SNPs directly (Extended B...