trmap alternative for gffcompare?
I have two simple questions
1.Can trmap used as an alternative for gffcompare when trying to identify novel transcripts?
- How to interpret the output file of the following code
$trmap -S -o charles <ref_gff> <query_gff>
reff_gff used = my annotation.gff3 file
query_gtf used = stringtie_merged.gtf file
I am not able to find enough resources to understand the output file ''charles". PFA "charles"
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