trmap alternative for gffcompare?

0

I have two simple questions

1.Can trmap used as an alternative for gffcompare when trying to identify novel transcripts?

  1. How to interpret the output file of the following code
    $trmap -S -o charles <ref_gff> <query_gff>

Here,
reff_gff used = my annotation.gff3 file
query_gtf used = stringtie_merged.gtf file

I am not able to find enough resources to understand the output file ''charles". PFA "charles"
charles screenshot

Please help

Best,
Akash


GffCompare


Novel-Transcripts


StringTie


RNA-Seq

• 15 views



Source link