gravatar for giulia.trauzzi

2 hours ago by

Hello,

I need to remove a common adapter and the barcode sequences from a bunch of samples (short reads - Illumina).

I was able to remove the common adapter with cutadapt from all of the samples, however I would like to know how to use trimmomatic on single end reads to remove my barcode sequences from my samples too. I need to supply a list of barcodes to the program I am assuming but I have no idea how to do this and I am struggling to find anything online.

Thanks

Giulia



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