Treated vs Untreated, single cell

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I was wondering if someone knew of any tutorial or had suggesting on the best way to explore treated vs untread samples using Scanpy

I have single nuc data from 8 samples half that were treated and half that weren't. I've created some UMAP plots showing the qualitative differences between groups, but I would like to explore this a bit further.

Any tutorials or papers on the topic would be greatly appreciated


Scanpy

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