I hope you all doing well.
I have a question for using Krona with MEGAN output.
I already export csv from MEGAN with taxon_name to taxon_id with tab separator to input that csv file in Krona using
I run ktImportTaxonomy with this command line:
ktImportTaxonomy -t 2 -s 3 Healthy_A.txt -o Healthy_A.html
and then I got this message:
Loading taxonomy... Taxonomy not found in /home/lulunisrna/anaconda3/opt/krona/taxonomy. Was updateTaxonomy.sh run? at /home/lulunisrna/anaconda3/opt/krona/scripts/../lib/KronaTools.pm line 1376.
How to solve this problem? I used KronaTools 2.7 and installed it trough conda.
Thank you for your help.