Tools to classify chromosomal, subtelomeric and telomeric reads

1

Hi there,

Given a set of fastq files for a genome, which are the best tools to classify reads into either chromosomal, subtelomeric or telomeric?

Thanks in advance,
Sergio


telomere


NGS

• 55 views

You will have to create a bed file with co-ordinates that point to those regions or any region of interest and use either bedtools or mosdepth to pull those reads out.

You can use biomart to query for start and end for any region.


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