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2 hours ago by

I have figured out how to extract fasta sequences from a bed file and then run motif discovery on it. Similarly, I have run my motif results in TOMTOM to identify proteins with similar motifs. But, I have yet to find a reliable way of searching for known motifs by protein ID/name. Any suggestions or recommendations on how to do this would be greatly appreciated. I figure MEMEsuite has a way but it is not outwardly clear. Cheers



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