Tool for Protein Alignment/Superimposition

1

Hi everybody,

I have about 2000 protein structures which are needed to be classified based on their structural and sequential similarities. I need to classify them into several groups then pick up one representative for each group. Do you have any relible and useful tool suggestion for that? By the way, I also need to note the RMSD values for each. I appreciate if you can help me!!! Thank you!


protein


superimposition


alignment

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