I've installed sratoolkit.2.10.0
at my home on a cluster. I have to download a numerous SRR
accessions to my home directory. There are a several options, as i can understand:
fastq-dump
- run
prefetch
utility, then convert resultedsra
files to
fastq
byfastq-dump
fasterq-dump
(able to use multi-threading, but if i'm correct
can not employ list ofSRR
accessions as input)
Which option is the fastest? Could you please provide a command line example which will be suitable for my purposes?
I've found very useful a post here:
download from SRA
However it seems too old.