gravatar for Denis

3 hours ago by

I've installed sratoolkit.2.10.0 at my home on a cluster. I have to download a numerous SRR accessions to my home directory. There are a several options, as i can understand:

  1. fastq-dump
  2. run prefetchutility, then convert resulted sra files to
    fastq by fastq-dump
  3. fasterq-dump (able to use multi-threading, but if i'm correct
    can not employ list of SRR accessions as input)

Which option is the fastest? Could you please provide a command line example which will be suitable for my purposes?

I've found very useful a post here:
download from SRA
However it seems too old.


modified 3 hours ago

3 hours ago


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