TEMP ,Type checker found wrong number of fields while tokenizing data line.
I've tried the
bash ../scripts/TEMP_Absence.sh -i ./test_chromosome.sorted.bam -s ../scripts -r ./test_TE_annotation.bed -t ./dm3_chr2L.2bit
on test data and I got this error
Error: Type checker found wrong number of fields while tokenizing data line. Perhaps you have extra TAB at the end of your line? Check with "cat -t"
I searched and found it might be caused by bedtools and I downgraded bedtools from 2.30 to 2.29 to 2.27 to 2.26 and still have the same error, but when i downgraded it to 2.25 I got a new error
Can't open test_chromosome.excision.cluster.rpmk.refined.bp.sfcp since No such file or directory
Since I'm using the tool on the test data provided by the tool it shouldn't raise any error
I'm using Ubuntu 16 and 20 I've tried in both laptops and got the same error
Can anyone please help me
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