TCGA data Query (GDCquery): external_gene_name " are missing

1

Hi,
I just got some weird output from TCGA dataset. As you can see in the below picture, some of the "external_gene_name " are missing. Would you please help me out with this issue? Thank you.
enter image description here


query.seq <- GDCquery(project = "TCGA-BRCA", 
                      data.category = "Transcriptome Profiling", 
                      data.type = "Gene Expression Quantification",
                      sample.type = c("Solid Tissue Normal", "Primary Tumor"),
                      workflow.type = "HTSeq - Counts")


GDCdownload(query.seq)

seq.brca <- GDCprepare(query = query.seq, summarizedExperiment = TRUE)


DATASET


GDCquery


GDCprepare


TCGA


GDCdownload

• 56 views



Source link