gravatar for Denis

2 hours ago by

St. Petersburg

Hello, Biostars community.

I have CHO cells with a transgene inserted into it at an unidentified location. I wish to plot per chromosome coverage from a BAM file obtained from aligning TLA (targeted locus amplification) sequencing data (50 bp single-end reads).
I want to get something like:

PLOT

Can anyone recommend a tool for this? I don't know how to find a transgene insertion site in a different way.

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modified 2 hours ago

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2 hours ago
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Denis0



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