Hello, Biostars community.
I have CHO cells with a transgene inserted into it at an unidentified location. I wish to plot per chromosome coverage from a BAM file obtained from aligning TLA (targeted locus amplification) sequencing data (50 bp single-end reads).
I want to get something like:
Can anyone recommend a tool for this? I don't know how to find a transgene insertion site in a different way.