Hi , I am trying to build a genome index using a Kallisto to analyze 10x data. I am at the step of making a transcript to gene map.
I am using t2g.py utility for the above-mentioned step.
my command is:
./t2g.py < Mus_musculus.GRCm38.96.gtf > transcripts_to_genes.txt
This command is generating an empty output file.
Any help is much appreciated