• Is 'hg19' the same as 'Human Genome Reference 38' ?

    Another newbie question I'm afraid...... I was informed that my bam file was generated against 'H...

  • dbSNP build in ENSEMBL biomaRt?

    I'm wondering how to determine what dbSNP build (i.e. 150 or 151) the variation annotations are b...

  • Annotate Illumina SNP file with Human GRCh37 genes file

    Hello everybody.

    This is my first post, so don't hesitate to tell me if i'm not efficently clear...

  • problem with uploading wiggle files to UCSC

    Hi Guys,
    I have made an script to build wiggle file from bam file (to upload them on UCSC genome ...

  • Download link to ensembl human GRCH37 transcript support level (TSL) flags information?

    Where to find the Human GRCH37 transcript support level flags information for bulk download from ...

  • What is the difference between GRCh37 and hs37? And hg19?

    Hi!
    I've been struggling with the naming conventions of human reference genomes...

    I know hg19 a...

  • Getting Pairwise Genome Alignments/Syntenic Regions From Ensembl Or Ucsc?

    This should be trivial but i cannot find the answer on the ensembl website, which just sends the ...

  • Working With Human Genome Assembly

    Hi,
    I am currently new to the field of bioinformatics. I want to work on Human Genome Assembly GR...

  • Refseq fasta files from different species

    Hello All,

    I'm new to the forum and I'm looking for a bit of help. I'd like to pull down the Ref...

  • Is GRCh37 and hg19 are the same?

    I would like to visualise some of my bam files on IGV, the reference genome used to analyse was G...

  • Cancer data for histone Chip-seq in human and mouse

    Does anyone know of any cancer dataset in mouse and data for the same cancer being available in H...

  • Best way of mapping homologous (non-coding) regions across organisms

    Dear Biostars,

    I would like to find the homologue of a genomic region "A" (can be any size) in a...

  • Are There Any Differences Between Human Protein-Protein Interaction And Mouse Protien-Protien Interaction?

    In my project, I need to use "human" embryonic stem cell related protein-protein interaction data...

  • How To Regenerate Cel Filed From Dat Files (Affymetrix Microrrays)

    I scanned Affymetrix Mouse Gene 1.0 ST microarray and chose the option "Human Gene 1.0 ST" by mis...

  • LocusZoom and new_fugue ERROR: new_fugue did not complete successfully (for GRCh37)

    I'm trying to run LocusZoom through terminal for GRCh37.
    Installed LocusZoom (Program + databas...

  • Feasibility of functional Impact prediction of mouse variants based on liftedOver mm10 to hg19 co-ordinates

    I am reaching out to everyone on the feasibility/usefulness of converting (liftOver) mm10 to hg19...

  • RCircus error while drawing ideogram

    I have a human bed file that is mapped to a mouse bed file. The thing is, some of the human rows ...

  • Comparing variants in vcf files that have been mapped to GRCh37 and GRCh38

    I have a VCF format file, which contains variants found for file mapped to hg38 (reference from G...

  • Advice on DE analysis of mouse and human merged RNA-seq data

    Hey everyone,

    I wanted some advice on the way I am planning on analyzing my samples in terms of...

  • Finding the right GO annotation flat file for human build GCRh37

    I found a download for the latest version of the GO annotation flat file here: 

    geneontol...



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