STAR alignment issue

0

Hello I am using STAR on my computer with 32gb RAM, I successfully made Index , my index directory (STARindex) seems to have all the files. But my alignment is done in 2 minutes and I am getting BAM file only 3kb. Can anyone suggest where I am going wrong , thank you

STAR --runMode alignReads
–-runThreadN 6
--genomeDir STARindex
--sjdbGTFtagExonParentTranscript Parent Hg19.gtf
--readFilesIn ERR420386_1.fastq ERR420386_2.fastq
--outSAMtype BAM Unsorted

This is the response I get
May 17 00:27:31 ..... started STAR run May 17 00:27:31 ..... loading genome May 17 00:29:24 ..... started mapping May 17 00:29:24 ..... finished mapping May 17 00:29:26 ..... finished successfully

Please help


STAR


RNAseq

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