Selective sweep for scaffold level reference genome

0

Currently I am working on non model organism and the reference gneome is is not anchored to chromosomes level. I have a vcf file called using the scaffold level refrence genome. I appreciate, if anyone suggest me a tool or pipeline to detect selective sweep using the SNP called from the WGS data.

Thank you in advance.


positiveselection


denovo


selectivesweep


scaffold

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