I want to discover chromatin patterns in ChipSeq data using segway. I followed the quick start instruction and trained a model on the test dataset.
wget http://noble.gs.washington.edu/proj/segway/2011/test.genomedata segway train test.genomedata traindir segway identify test.genomedata traindir identifydir
Now, I would like to know which patterns are enriched in a given state (Similar to Fig1 in the tools publication or ChromHMM's emission parameters heatmaps.)
I can not find any mentioning of it in its documentation