I am planning to do single cell RNA-seq with 10X genomic platform. I was wondering if there are ...
Is there an optimal way to do single-cell RNA-seq counts normalization? Most RNA-seq normalizatio...
Hello,
I need your help to address the parameter found in [bcl2fastq2][1] tool when demultiplexi...
Hi All,
I am working on a single cell rnaseq dataset for two conditions. 10X genomics protocol a...
Dear all,
i am analysis 10X genomics single cell data these days, but i donot know the specific ...
I have treatment and control samples single cell sequencing performed using 10x method. I wanted ...
Could anyone inform me about the best approach for merging 2 technical replicates **from the same...
I seek advice as to the best strategy to salvage high quality reads from a 10X single cell RNA-, ...
Hi,
I have results from a 10x genomics single cell experiment.
In the experiment I have sequence...
for the initial analysis of our data set we would like to convert our single-cell RNA-Seq into Bu...
Dear all,
We performed a scRNA-seq experiment using the [cell hashing](https://genomebiology.bio...
I created single-cell RNAseq libraries from neurons and sequenced them at depths of ~10 million r...
Dear all, greetings
i'd like to ask you for a piece of advise please : we have 3 scRNA-seq samp...
Hi All,
I have 6,000 single-cell expression counts from 49 head and neck squamous cell carcinom...
Hello,
I am new to this field, and would greatly appreciate an answer to this question.
I am l...
I am new to scRNA analysis and confused on a simple problem.
I have some genes of interest and I...
Hi guys
I am new to biological field and single cell RNA seq analysis , and I do not have idea h...
Hi,
I have a question about how to decide on the clustering resolution to use for single-cell RN...
I want to compute the correlation between bulk-RNA-seq data(Nugen Ovation RNAseq V2 amplified lib...
Hi,
I am performing combined analysis of three 10x Genomics scRNA-seq samples using Cell Ranger ...
I'm interested specifically in 'failures' I got on R2 (R1 being just the barcode + UMI). Note thi...
Hi guys,
I need to upload in a public repository single cell paired ends data from 10X, i.e. I h...