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1 hour ago by

I am not a Seurat user but intuitively (unless there is a dedicated function for it) you probably have to first subset both datasets to only include genes that actually have homologs between each other, and then replace the original gene names with the ortholog names from the table so both datasets have the same gene names, because from what I know that is what is required so that the integration function can work. Otherwise the function has no way of telling which genes are actually "the same" so orthologs between the species.

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