• sambamba markdup command not working

    Hi,
    I downloaded the pre-compiled binary for sambamba (sambamba_v0.6.6_linux.tar.bz2) from https:...

  • Exome Seq tutorial

    Can anybody send me the tutorial for Exome-Seq? I am interested to learn the variant calling.

  • samtools variant calling workflow

    Hi,

    I am working on variant calling on fungal genomes. I have Illumina HiSeq reads. I am new to ...

  • Sambamba: High Performance Alternative For Samtools And Picard For Indexing, Sorting And Merging Bam Files

    Sambamba is a high performance modern robust and fast tool (and library), written in the D pro...

  • Very few somatic mutations/variants using GATK's best practices (mouse exome sequencing)

    I'm working on somatic variant calling from mouse exome sequencing data, and my pipeline is based...

  • Maximum Depth Filter

    I would like to filter VCF files with a maximum depth filter, so removing variants with a coverag...

  • Coverage variance and mean coverage

    Hi everyone,
    I am new to bioinformatics field. So please apologize for my questions that I am not...

  • sambamba-markdup: unable to move file pointer

    Dear all,

    I have launched sambamba with this command:

    sambamba markdup -r -t 8 --overflow-l...

  • variant calling with ALT contigs in hg38

    After reading the Board Institute tutorial on [variant calling with ALT contigs][1], just wonder ...



  • Source link