Salmon Script Troubleshooting for RNA Seq Data

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Hello!

I am working on a Slurm sbatch bash script to perform RNAseq analysis with Salmon in an HPC environment.

I keep receiving the error "salmon quant was invoked improperly" but can't figure out where my error is.

Can anyone spot any errors to help me figure this out?

Script and slurm.out error are attached.

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enter image description here


NextGenerationSequencing


RNAseq


Bash


Slurm


Salmon

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