RNAseq analysis for aspergillus niger ?

1

hello,
I am working on analysis of RNAseq from three strains of aspergillus niger with three replicates for each condition (treatment and control). I have the count file for each strain as table limited file and the sequences for each transcripted are stored as text file with their transcript id.
I want to use R for analysis the differential expressed gene in each strain, also combine the same transcripts from each strain in file to compare their expression through use of heatmap.
further, I would like to do gene ontology analysis for the different genes for each strain as the organism is non-model organism.
could someone help me in this task?
thank you for your help.


aspergillus


niger


RNAseq

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