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2 hours ago by

Hi I would like to remove all the duplicates that show up in the fastqc report for my DNA libraries. I am using Clumpify from bbmap which doesn't seem to remove all the duplicates with -dedup=T.
I would like to remove all PCR duplicates, optical duplicates, and biological duplicates from my paired-end fastq files. What is the best way to do it? Thank you!

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C40



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