• Deleting Stop Codons

    Hello,

    I collect sequences for multiple species from UCSC Genome Browser. In order to enter my s...

  • Include STOP codon in getorf output

    I am using getorf from EMBOSS.
    I want to include the STOP codon in my output file in the nucleoti...

  • find ORF in sequence python

    Hello everyone.
    I'm working on Python script that find ORF for a sequence.
    It runs well only for ...

  • Remove sequences with stop codons from FASTA file

    Hi all,

    I have some fasta file with ORF (aminoacid) sequences with around 500,000 sequences. How...

  • Extract start and stop codons in multiple seq alignment

    Hi,

    I have multiple sequence alignment files and each contains around 450 sequences. I have been...

  • Perl help regarding hash

    Hello,
    Ive created a hash, of codons and amino acids. My program should allow a user to input a ...

  • Does not begin with a recognised start codon

    The problem I am facing is that I am getting errors like
    Warning: Sequence 280 "DNEG10010009 ...

  • Python- Find ORF in sequence, compound return statement

    HI all. I'm working on Python script that find ORF for a sequence, within a function of code. I h...

  • Getting in frame stop codons from fasta

    Hello, I need to find a start codon and all in frame stop codons related to that primary start co...

  • Processing of sequences for CodonW use

    I need to perform codon usage analysis. I read about CodonW and CodonO. From the literature, inpu...

  • Predicting coding sequence region from GFF with exons + reference genome

    I have inherited a collection genome annotation files (gff3) for several newly assembled genomes ...

  • Internal stop codons in protein sequences

    Hi, there are protein sequences with internal stop codons ( '*' inbetween).

    For example,

    http:/...

  • EGFP under the promoter of Puromycin

    Hi All, I want to put my EGFP under the PGK promoter of Puromycin through IRES for mammalian syst...

  • Removing all stop codons from Sequence Record using Biopython

    Hello Everyone,

    I have sequences that occasionally have an erronious stop codon. Is there a way ...

  • How to identify ORFs in Python dictionaries

    Hi everyone,

    From a FASTA file, I have created a dictionary in the form : seqs = {name1 : seq1,...

  • Python script to find ORFs not returning expected results for final frame

    I am using this as a learning exercise, I realize there are existing tools to determine the end r...



  • Source link