Remove reads from bam file that partially covers a region
I have several bam files and am working with a 15bp deletion at a specific region.
There are reads that support the deletion and there are reads that partially cover the deleted region.
I want to filter out those reads (as shown in circle in the attached IGV snapshot) that partially cover the deleted region from the bam files.
I am new in this area, so any suggestions of suitable tool or way to do that is much appreciated.
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