I have a vcf file I filtered based on groups, and now I want to filter it again so it only contains fixed differences from the reference (e.g. remove all polymorphic loci within the set). Is there a straightforward way to do this?
I have a vcf file I filtered based on groups, and now I want to filter it again so it only contains fixed differences from the reference (e.g. remove all polymorphic loci within the set). Is there a straightforward way to do this?