gravatar for sara.aglantarek

2 hours ago by

Hi everyone! I need some help on KING. I have a multivcf, containing informations about a certain number of trios and I want to confirm the relationship of the trios: so parent-proband = 1st degree, parent-parent = unrelated/2nd degree (if they're consanguineous) etc...

I have the pedigree file which I created from scratch and looks like this:
ped filedrive.google.com/open?id=1-oJFXZH7jCN1VBz1dKHyND3KhBmuHmhf

I tried to run king without calling the pedigree file and this is what I get using this command:

king -b multisample.bed --related --degree 2

kinship inference

drive.google.com/open?id=1KVaM_iCnlTnCEV88gAHEjM-bY64Cd9B8

I would like to use the new pedigree file using king, but I don't know how to do this, but on KING's manual there's nothing about it.

Thank you very much in advance.



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