Redundancy reduction of de novo transcriptome assemblies with Compacta?
I've been sweating over how best to reduce the redundancy in a de novo transcriptome assembled using
Trinity. I found this tool called
Compacta (here's the
GitHub repository) that seems to be aimed at solving precisely this problem.
Can anyone comment/share their thoughts on this tool? Has anybody used it before? I haven't really found any papers citing it (yet).
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