Reclustering single cell rna-seq data
I have a single-cell rna seq dataset with already defined clusters and cell types (9 of them).
For 3 cell types I would like to use different cell-type markers to define them.
What would be the best approach here? Do the clustering of the whole dataset again / find markers for each already existing cluster and just re-define them / subset those 3 and re-cluster them? Or something else?
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