I am trying to import single-cell data from the human cell atlas (e.g, www.covid19cellatlas.org/#vento18-10x).
I want to use this files within Seurat, however - I keep getting this error:
> kidney <- ReadH5AD("documents/Datasets/Kidney/") Error in H5File.open(filename, mode, file_create_pl, file_access_pl) : HDF5-API Errors: error #000: ../../src/hdf5-1.10.0-1/src/H5F.c in H5Fopen(): line 579: unable to open file class: HDF5 major: File accessibilty minor: Unable to open file error #001: ../../src/hdf5-1.10.0-1/src/H5Fint.c in H5F_open(): line 1208: unable to read superblock class: HDF5 major: File accessibilty minor: Read failed error #002: ../../src/hdf5-1.10.0-1/src/H5Fsuper.c in H5F__super_read(): line 271: unable to locate file signature class: HDF5 major: File accessibilty minor: Not an HDF5 file error #003: ../../src/hdf5-1.10.0-1/src/H5FDint.c in H5FD_locate_signature(): line 124: unable to read file signature class: HDF5 major: Low-level I/O minor: Unable to initialize object error #004: ../../src/hdf5-1.10.0-1/src/H5FDint.c in H5FD_read(): line 217: driver read request failed class: HDF5 major: Virtual File Layer minor: Read fai
Any ideas how to read in H5AD files? This has been pretty challenging for me to figure out.