R Programming for Differential Gene Expression Analysis

1

I am using a ballgown to create objects. I have only three samples (b73,f1, and mo17). These three samples are present in this path (Ballgwon>samples>b73,f1,mo17>all CTAB files). I want to do a Differential gene expression analysis.

I am trying to run this command:

(bg = ballgown(dataDir= "samples", samplePattern = "ERR", pData=pheno_data). 

Error:

Tue May 25 17:34:22 2021
Tue May 25 17:34:22 2021: Reading linking tables
Error in file(file, "rt") : invalid 'description' argument

I have tried multiple ways but all failed. Can anybody help me. I am not lazy to do it by myself but I am trying it for 4 days. Thanks for understanding!


Ballgown


RNA-SEQ


Programming


R


DEG

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