gravatar for venura

8 hours ago by

Hi,

I have a quick question regarding directing the path to the indexed genome folder.
Following is the code I used;

hisat2 -p $threads --dta --rna-strandness RF -x /scratch/datasets/genome_indexes/other_genomes/potato/hisat2 -1 ${SAMPLE}.fq.gz -2 ${SAMPLE}.fq.gz -S ${SAMPLE}.sam

after loading the module

module load HISAT2/2.2.0-foss-2018b

I was running the script on our ADA cluster and got the following error

sh: /sw/eb/software/HISAT2/2.2.0-foss-2018b/bin/hisat2_read_statistics.py: No such file or directory
(ERR): "/scratch/datasets/genome_indexes/other_genomes/potato/hisat2" does not exist
Exiting now ...

Can someone help me to resolve this issue?
Thanks in advance.

link

modified 8 hours ago

written
8 hours ago
by

venura60



Source link