Pulling specific variables

0

Hi there,

I have the variable sample.site which has different sites e.g. heart, leg, arm...

Now for some analysis I only want to look at e.g. arm.
It works perfectly with

dds0_sub <- dds0[,dds0$Sample.Site == "arm"]

But now I do the same with leg and I

dds0_sub <- dds0[,dds0$Sample.Site == "leg"] but I get this error:

Error in designAndArgChecker(object, betaPrior) : full model matrix
is less than full rank

Do you understand what is happening?

Thank you so much,
Bine


deseq2

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