Pseudocode for gapped BLAST seed extension

0

Hello all,

I am trying to understand in detail how does the gapped BLAST seed extension DP algorithm works.
Despite searching for days now, I could not find anywhere a pseudocode that would allow implementing this in python.
Not being a C programmer, it would be impossible for me to grasp this from the BLAST source code.

Can anyone help me with this?

Thank you all.
Best,

Daniel


Pseudocode


smith-waterman


seed


extend


BLAST

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