Programmatically adding hydrogen and remove water to multiple PDB files

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I'm trying to dock a ligand to several hundred PDB file (receptors).
I thus need to prepare the those PDB files like removing water and adding hydrogen.

I can do that manually using Autodock or Pymol. But it's too troublesome.
Is there a way to do it programmatically with Python or R or any command line procedure?


docking


pdb


python


structure

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