Hello, I have encountered a "uniprot database" problem for diamond blast . I have question about these commands on the tutorial [blobtoolkit.genomehubs.org/install/, github.com/blobtoolkit/blobtools2/issues/6], but those don't seem to be working for me:
# extract and concatenate protein FASTA files touch reference_proteomes.fasta.gz find . -mindepth 2 | grep "fasta.gz" | grep -v 'DNA' | grep -v 'additional' | xargs cat >> reference_proteomes.fasta.gz
I did not receive any error message,but it just creates a "reference_proteomes.fasta.gz" with 0B, so reference_proteomes.fasta.gz created by this command is pretty much empty (see the screencap)
Here are all the list of " _.fasta.gz" looks like in the "uniprot" folder:
Any suggestion for how to revise this command based upon the file names 😕
find . -mindepth 2 | grep "fasta.gz" | grep -v 'DNA' | grep -v 'additional' | xargs cat >> reference_proteomes.fasta.gz"
Please let me know, thank you!