gravatar for Pueblo errante

8 hours ago by

Hi!
I realized my genome assembly de novo in STACKS and I used this command to called the SNPs in VCF format.

populations -P ../stacks -M ../stacks/popmap.lst --fstats --vcf --genepop --threads 80

I have a problem with the VCF, I don´t have any value of quality (column "QUAL"), I don´t know what´s wrong.

Thank you so much! and please feel free to ask me any additional info.



Source link