I downloaded HTSeq file but these are about 600 patients. How can I filter for primary tumors and not all patient?
I tried the following code to exclude non-primary samples but I get error. with this code I could download the data file but
when I added line:
sample.type = "Primary solid Tumor"I get error
Please help me.
CancerProject <- "TCGA-KIRC" query <- GDCquery(project = CancerProject, data.category = "Transcriptome Profiling", data.type = "Gene Expression Quantification", sample.type = "Primary solid Tumor" workflow.type = "HTSeq - Counts")
Error: unexpected symbol in:
" sample.type = "Primary solid Tumor"