gravatar for suzanne96yao

4 hours ago by

Dear all,

I want to predict the secondary structure using MSA as input.

I looked up Jpred4, which can use both sequence fasta or alignment in fasta format as input. However, it only provides a RESTful API for users to submit the jobs to their server, and I would like to work locally instead.

PSIPRED is another option, but it seems to not accept B in the amino acid code...

Do you have any other recommendation?

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