gravatar for Friederike

2 hours ago by

United States

You can generate the density plot and heatmaps using the peaks. If you have 2 BED files with the peaks from TF 1 and those from TF 2, you can feed those into deepTools' computeMatrix as described here. (You don't need to use the scale-regions mode, in fact, I would recommend to use the reference point mode with the reference point set to the center of the peaks --referencePoint center)

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