plot-vcfstats

1

Hello everyone,
Can anyone tell me how to use plot-vcfstats for many input files.
I have vcf files for chr1 to chr22. I have generated test.vchk file for each chr using

bcftools stats chr1.vcf > test.vchk 

I now want to use plot-vcfstats for all of these files so that i can get one graph for all the chromosomes.
Can anyone please help me out with this?


bcftools


snp


vcf


stats

• 20 views

You could use the command to merge results from different chromosomes:

plot-vcfstats -m chr1.vchk chr2.vchk ...


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