Phylogeny Analysis tools

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I got a draft assembly genome of one kind fish. I have annoted the assembly by Maker and Interproscan. And now I want to do some evolution analysis, in particular, construct phylogeny tree for this genome and some other fishes' genomes released.

I tried MEGA to construct the phylogenetic tree but it failed cause the genome data is huge.

Could anyone recommend a tool or protocol for this phylogeny analysis? It will be very helpful if the tools web-based.

Thank you for sharing! Any suggestion, discussion or comment will be welcomed. 🙂


Phylogeny

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